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Publications

A genome-wide association study on African-ancestry populations for asthma Rasika A. Mathias, ScD, Audrey V. Grant, PhD, Nicholas Rafaels, MS, Tracey Hand, MS, Li Gao, MD, PhD, Candelaria Vergara, MSc, Yuhjung J. Tsai, MD, Mao Yang, MS, Monica Campbell, BS, Cassandra Foster, Peisong Gao, MD, PhD, A. Togias, MD, Nadia N. Hansel, MD, MPH, Gregory Diette, MD, N. Franklin Adkinson, MD, Mark C. Liu, MD, Mezbah Faruque, MD, PhD, Georgia M. Dunston, PhD, Harold R. Watson, MD, Michael B. Bracken, PhD, Josephine Hoh, PhD, Pissamai Maul, RN, Trevor Maul, RN, Anne E. Jedlicka, MS, Tanda Murray, MS, Jacqueline B. Hetmanski, MS, Roxann Ashworth, MHS, Chrissie M. Ongaco, BS, Kurt N. Hetrick, MS, Kimberly F. Doheny, PhD, Elizabeth W. Pugh, PhD, MPH, Charles N. Rotimi, PhD, Jean Ford, MD, Celeste Eng, BS, Esteban G. Burchard, MD, Patrick M. A. Sleiman, PhD, Hakon Hakonarson, MD, PhD, Erick Forno, MD, Benjamin A. Raby, MD, Scott T. Weiss, MD, Alan F. Scott, PhD, Michael Kabesch, MD, Liming Liang, MS, Goncxalo Abecasis, PhD, Miriam F. Moffatt, PhD, William O. C. Cookson, MD, Ingo Ruczinski, PhD, Terri H. Beaty, PhD, and Kathleen C. Barnes, PhD. J ALLERGY CLIN IMMUNOL 2009

Jillian F. Maddox, Allan M. Crawford, Roxann Ingersoll, James W. Kijas, Brian P. Dalrymple, Ian R. W. Evans, Frank W. Nicholas, John McEwan, Tracey van Stijn, Herman Raadsa and the International Sheep Genomics Consortium. Using a 1.5K ovine SNP array to expand the sheep linkage map. Download (.pdf format)

An Integrated Genomic Analysis of Human Glioblastoma Multiforme . D. Williams Parsons, Siân Jones, Xiaosong Zhang, Jimmy Cheng-Ho Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, I-Mei Siu, Gary L. Gallia, Alessandro Olivi, Roger McLendon, B. Ahmed Rasheed, Stephen Keir, Tatiana Nikolskaya,6 Yuri Nikolsky, Dana A. Busam, Hanna Tekleab, Luis A. Diaz Jr., James Hartigan, Doug R. Smith, Robert L. Strausberg, Suely Kazue Nagahashi Marie, Sueli Mieko Oba Shinjo, Hai Yan, Gregory J. Riggins, Darell D. Bigner, Rachel Karchin, Nick Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler, Science, 4 September 2008 (10.1126/science.11643820).

Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses. Siân Jones, Xiaosong Zhang, D. Williams Parsons, Jimmy Cheng-Ho Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S. Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R. Smith, Manuel Hidalgo, Steven D. Leach, Alison P. Klein, Elizabeth M. Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R. Eshleman, Scott E.Kern, Ralph H. Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler, Science, 4 September 2008 (10.1126/science.1164368).

Excess Maternal Transmission of Markers in TCOF1 Among Cleft Palate Case-Parent Trios From Three Populations Sull JW, Liang KY, Hetmanski JB, Fallin MD, Ingersoll RG, Park JW, Wu-Chou YH, Chen PK, Chong SS, Cheah F, Yeouw V, Park BY, Jee SH, Jabs EW, Redett R, Scott AF, Beaty TH. American Journal of Medical Genetics Part A 146A:2327--2331 (2008)

A Novel Variant in the Platelet Endothelial Aggregation Receptor-1 Gene Is Associated With Increased Platelet Aggregability. Herrera-Galeano JE, Becker DM, Wilson AF, Yanek LR, Bray P, Vaidya D, Faraday N, Becker LC. Arterioscler Thromb Vasc Biol. 2008 May 29.

Differential parental transmission of markers in RUNX2 among cleft case-parent trios from four populations.Sull JW, Liang KY, Hetmanski JB, Fallin MD, Ingersoll RG, Park J, Wu-Chou YH, Chen PK, Chong SS, Cheah F, Yeow V, Park BY, Jee SH, Jabs EW, Redett R, Jung E, Ruczinski I, Scott AF, Beaty TH. Genet Epidemiol. 2008 Mar 20.

Heritability of platelet function in families with premature coronary artery disease. Bray PF, Mathias RA, Faraday N, Yanek LR, Fallin MD, Herrera-Galeano JE, Wilson AF, Becker LC, Becker DM. J Thromb Haemost. 2007 Aug;5(8):1617-23.

Berthier-Schaad Y, Kao WH, Coresh J, Zhang L, Ingersoll RG, Stephens R, Smith MW. Reliability of high-throughput genotyping of whole genome amplified DNA in SNP genotyping studies. Electrophoresis 2007 Aug 14;28(16):2812-2817. Click to view Pubmed entry

Dense SNP association study for bipolar I disorder on chromosome 18p11 suggests two loci with excess paternal transmission.Mulle JG, Fallin MD, Lasseter VK, McGrath JA, Wolyniec PS, Pulver AE. Mol Psychiatry. 2007 Apr;12(4):367-75. Epub 2006 Oct 31.  PMID: 17389904

R. Ingersoll, I.A. McMullen, G. Ingersoll, E.W. Pugh, A.F. Scott. Factors Associated with Success of Custom SNP Assays Factors Associated with Success of Custom SNP Assays. 2006 Mar 10 Download(.pdf format, 2 MB )

Mathias RA, Gao P, Goldstein JL, Wilson AF, Pugh EW, Furbert-Harris P, Dunston G, Malveaux F, Togias A, Barnes KC, Beaty TH, Huang SK. A graphical assessment of p-values from sliding window haplotype tests of association to identify asthma susceptibility loci on chromosome 11q. BMC Genet. 2006 Jun 14;7(1):38. Download (.pdf format)

Comparison of SNP tagging methods using empirical data: association study of 713 SNPs on chromosome 12q14.3-12q24.21 for asthma and total serum IgE in an African Caribbean population. Chi PB, Duggal P, Kao WH, Mathias RA, Grant AV, Stockton ML, Garcia JG, Ingersoll RG, Scott AF, Beaty TH, Barnes KC, Fallin MD. Genet Epidemiol. 2006 Jul 7.

Analysis of candidate genes on chromosome 2 in oral cleft case-parent trios from three populationsBeaty TH, Hetmanski JB, Fallin MD, Park JW, Sull JW, McIntosh I, Liang KY, Vanderkolk CA, Redett RJ, Boyadjiev SA, Jabs EW, Chong SS, Cheah FS, Wu-Chou YH, Chen PK, Chiu YF, Yeow V, Ng IS, Cheng J, Huang S, Ye X, Wang H, Ingersoll R, Scott AF. Hum Genet. 2006 Nov;120(4):501-18. Epub 2006 Sep 5.

High Throughput SNP and Expression Analyses of Candidate Genes for Non-syndromic Oral Clefts. Park JW, Cai J, McIntosh I, Jabs EW, Fallin MD, Ingersoll R, Hetmanski JB, Vekemans M, Attie-Bitach T, Michael L, Scott AF, Beaty TH. J Med Genet. 2006 Jul;43(7):598-608. Epub 2006 Jan 13.

Johanna Jakobsdottir, Yvette P. Conley, Daniel E. Weeks, Tammy S. Mah, Robert E. Ferrell, and Michael B. Gorin. Susceptibility Genes for Age-Related Maculopathy on Chromosome 10q26, Am. J. Hum. Genet., 77:389-407, 2005.

Variants in the gene encoding C3 are associated with asthma and related phenotypes among African Caribbean families, Barnes KC, Grant AV, Baltadzhieva D, Zhang S, Berg T, Shao L, Zambelli-Weiner A, Anderson W, Nelsen A, Pillai S, Yarnall DP, Dienger K, Ingersoll RG, Scott AF, Fallin MD, Mathias RA, Beaty TH, Garcia JG, Wills-Karp M, Genes Immun. 2005 Dec 15.

Beaty TH, Fallin MD, Hetmanski JB, McIntosh I, Chong SS, Ingersoll R, Sheng X, Chakraborty R, Scott AF. Haplotype diversity in 11 candidate genes across 4 populations. Genetics. 2005 Jun 18